2012 Fall Publications from the Department of Ecology and Evolution

• Akçakaya, H.R., S. Ferson, M.A. Burgman, D.A. Keith, G.M. Mace and C.R. Todd. 2012. Commentary: IUCN classifications under uncertainty. Environmental Modelling & Software. 38:119-121.
• Harris, J.B.C., D.A. Fordham, P.A. Mooney, L.P. Pedler, M.B. Araújo, D.C. Paton, M.G. Stead, M.J. Watts, H.R. Akçakaya, and B.W. Brook. 2012. Managing the long-term persistence of a rare cockatoo under climate change. Journal of Applied Ecology. 49:785–794.
• Furan, C. G., F. A. von Hippel, and M. A. Bell. 2012. Partial reproductive isolation of a recently derived resident-freshwater population of threespine stickleback (Gasterosteus aculeatus) from its putative anadromous ancestor. Evolution 66
• Blass, E., M. Bell, and S. Boissinot. 2012. Accumulation and rapid decay of non-Ltr retrotransposons in the genome of the threespine stickleback. Genome Biology and Evolution 4:687-702. (DOI:10.1093/gbe/evs044)
• Lohman, B. K, H. I. Sirotkin, and M. A. Bell. 2012. A whole-mount method for trypsin clearing and collagen type II antibody staining. Copeia. In press.
• Dávalos, L.M.*, A.L. Cirranello*, J.H. Geisler, and N.B. Simmons. 2012. Understanding phylogenetic incongruence: lessons from phyllostomid bats. Biological Reviews 84(7). *Equally authored.
• Corthals, A., A. Köller, D.W. Martin, R. Rieger, E.I. Chen, M. Bernaski, G. Recagno, and L.M. Dávalos. 2012. Detecting the Immune System Response of a 500 Year-Old Inca Mummy. PLoS One 7(7), e41244.
• Hutter CR & Guayasamin JM. 2012. A new cryptic species of Glassfrog (Centrolenidae: Nymphargus) from Reserva Las Gralarias, Ecuador. Zootaxa, 3257: 1–21.
• Coloma LA, Carvajal-Endara S, Dueñas JF, Paredes-Recalde A, Morales-Mite M, Almeida-Reinoso D, Tapia EE, Hutter CR, Toral E, & Guayasamin JM. 2012. Molecular phylogenetic systematics of stream frogs of the Hyloscirtus larinopygion group (Anura: Hylidae), and description of two new species from Ecuador. Zootaxa, 3364: 1–74.
• Arditi, R and Ginzburg, L.R. 2012. How Species Interact: Altering the Standard View on Trophic Ecology. Oxford University Press, New York, NY.
• Coylyvan, M, and Ginzburg, L.R. 2012. Ecological laws. In Oxford Bibliographies Online: Ecology. Ed. David Gibson: Oxford University Press, New York.
• Jorge Velásquez-Tibatá, Paul Salaman, Catherine H. Graham. 2012. Effects of climate change on species distribution, community structure, and conservation of birds in protected areas in Colombia. Reg Environ Change, DOI:10.1007/s10113-012-0329-y.
• Lopez, G.R., Levinton, J. 2012. Particulate organic detritus and detritus feeders in coastal food webs. Treatise on Estuarine and Coastal Science, volume 6, Trophic Structure of Estuaries and Coasts, Luczkovich, J., Wilson, J., eds., Elsevier, Amsterdam.
• Allen, B. J., Rodgers, B., Tuan, Y., Levinton, J. S. 2012. Size-dependent temperature and desiccation constraints on performance capacity: Implications for sexual selection in a fiddler crab. Journal of Experimental Marine Biology and Ecology 438:93-99.
• Munguia, P., Levinton, J.S., Silbiger, N.J. 2013. Latitudinal differences in thermoregulatory color change in Uca pugilator. Journal of Experimental Marine Biology and Ecology 440:8-14.
• Grant, E.H.C., H.J. Lynch, R. Muneepeerakul, M. Arunachalam, I. Rodriguez-Iturbe, and W.F. Fagan. 2012. Interbasin water transfer, riverine connectivity, and spatial controls on fish biodiversity. PLoS ONE. 7(3):e34170.
• Lynch, H.J., R. Naveen, P.N. Trathan and W.F. Fagan. 2012. Spatially integrated assessment reveals widespread changes in penguin populations on the Antarctic Peninsula. Ecology. 93(6):1367-1377.
• Casanovas, P., H.J. Lynch, and W.F. Fagan. 2012. Multi-scale patterns of lichen and moss richness along the Antarctic Peninsula. Ecography. 35:001-011.
• Lynch, H.J., R. White, A.D. Black, and R. Naveen. 2012. Detection, differentiation, and abundance estimation of penguin species by high-resolution satellite imagery. Polar Biology. 35:963-968.
• Lynch, H.J., W.F. Fagan, R. Naveen, S.G. Trivelpiece, and W.Z. Trivelpiece. 2012. Differential advancement of breeding phenology in response to climate may alter staggered breeding among sympatric pygoscelid penguins. Marine Ecology Progress Series. 454:135-145.
• Rest, J.S., K. Bullaughey, G.P. Morris, W.H. Li. 2012. Contribution of Transcription Factor Binding Site Motif Variants to Condition-Specific Gene Expression Patterns in Budding Yeast. PLoS ONE. 7(2): e32274. doi:10.1371/journal.pone.003227.
• Xi, Z., R.K. Bradley, K.J. Wurdack, K.M. Wong, M. Sugumaran, K. Bomblies, J.S. Rest*, C.C. Davis. 2012. Horizontal transfer of expressed genes in a parasitic flowering plant. BMC Genomics, 13:227 doi:10.1186/1471-2164-13-227. *Co-corresponding author
• Zhang, T. , R. A. DeSimone, X. Jiao, F. J. Rohlf, W. Zhu, Q. Q. Gong, S. R. Hunt, T. Dassopoulos, R. D. Newberry, E. Sodergren, G. Weinstock, D. N. Frank, E. Li. 2012. Host genes related to Paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition. PLoS ONE, 7(6):e30044. 7pp.
• Li, E., C. M. Hamm, A. Gulati, R. B. Sartor, H. Chen, X. Wu, T. Zhang, F. J. Rohlf, W. Zhu, C. Gu, C. E. Robertson, N. R. Pace, E. C. Boedeker, N. Harpaz, J. Yuan, G. M. Weinstock, E. Sodergren, D. N. Frank. 2012. Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS ONE, 7(6):e26284. 10pp.
• Baab, K. L., K. P. McNulty, and F. J. Rohlf. 2012. The Shape of Human Evolution: A Geometric Morphometrics Perspective. Evolutionary Anthropology, 21:151-165.
• Cruz, R. A. L., M. J. R. Pante, and F. J. Rohlf. 2012. Geometric Analysis of Shell Shape Variation in Conus (Gastropoda: Conidae). Zoological Journal of the Linnean Society, 165:296-310.
• Fredric V. Vencl and Robert B. Srygley. 2012. Enemy targeting, trade-offs, and the evolutionary assembly of a tortoise beetle defense arsenal. Evol Ecol, DOI:10.1007/s10682-012-9603-1.
• Wiens JJ, Hutter CR, Mulcahy DG, Noonan BP, Townsend TM, Sites JM Jr, & Reeder TW. 2012. Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species. Biology Letters, in press, published online: DOI:10.1098/rsbl.2012.0703.